docs: update file permissions for multiple documentation files

Z-M-Huang committed Mar 19, 2026

docs: tools are now optional, update manifest reference and troubleshooting

Z-M-Huang committed Mar 14, 2026

Add comprehensive documentation for git-doc-mcp - Getting Started: step-by-step guide for first MCP server - Manifest Reference: complete schema documentation - Writing Actions: ctx API reference with patterns and constraints - Defining Tools: input schemas, annotations, naming conventions - Resources & Prompts: static resources, prompt templates, arg substitution - Managing Secrets: scope patterns, runtime approval, security model - Security Model: three-layer isolation, SSRF, TOFU, audit logging - CLI Reference: all flags, integration examples - Best Practices: manifest design, action patterns, hosting tips - Examples: 5 complete working examples - Troubleshooting: common issues and fixes - Topic Index: machine-readable index with tags for MCP tool access

Z-M-Huang committed Mar 14, 2026