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maintenanceAn MCP server that queries 19 package registries (npm, PyPI, crates.io, etc.) to retrieve the latest version of packages and their metadata.
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MIT
Best nf-core MCP Servers
nf-core is a community effort to collect a curated set of analysis pipelines built using Nextflow, providing best-practice workflows for bioinformatics analyses.
Why this server?
Queries nf-core for the latest version of modules and subworkflows.
Why this server?
Provides tools for managing and navigating nf-core pipeline repositories, including listing pipelines, accessing configurations and workflows, searching through pipeline files, and exploring pipeline modules.
FlicenseDqualityDmaintenanceEnables users to manage and navigate nf-core bioinformatics pipeline repositories, allowing list, search, and explore operations on pipeline configurations, workflows, and modules.Last updated3Why this server?
Generates nf-core/rnaseq samplesheets from SRA/GEO accessions or SeqRun dicts, enabling automatic pipeline execution.
Alicense-qualityCmaintenanceUnified genomic track, peak, and sequence retrieval tool for ENCODE, ChIP-Atlas, ReMap, GEO, and SRA/ENA with unified metadata, resolved DOI/PMID provenance, and direct FASTQ download without SRA toolkit.Last updatedMIT