Best PubMed MCP Servers
PubMed is a free search engine accessing primarily the MEDLINE database of references and abstracts on life sciences and biomedical topics maintained by the United States National Library of Medicine.
Why this server?
Federates search from PubMed, enabling discovery of biomedical literature.
AlicenseAqualityAmaintenanceMCP server in Go to search and download books, papers, comics and more from Library Genesis — three focused tools, one static binary, no account required.Last updated243MITWhy this server?
Provides tools to search academic papers from PubMed, enabling retrieval of biomedical literature.
Why this server?
Provides tools for searching PubMed, retrieving citations, full text, and related metadata, with features like auto-correction (ESpell) and vocabulary translation (ICD to MeSH).
AlicenseAqualityBmaintenanceAn intelligent research assistant MCP server for AI agents, providing task-oriented literature search and analysis across multiple academic databases.Last updated24620Apache 2.0Why this server?
Offers SQL querying of PubMed biomedical literature and citations.

microquery-mcpofficial
AlicenseAqualityDmaintenanceMCP server to ask research questions about real-world datasets and get actual database records back, with auto-registration and trial credit.Last updated4MITWhy this server?
Provides access to search and retrieve medical literature from PubMed's database of over 30 million citations, including research articles, clinical studies, and medical reviews
AlicenseBqualityDmaintenanceAn MCP server that provides comprehensive medical information by querying multiple authoritative medical APIs including FDA, WHO, PubMed, Google Scholar, and RxNorm.Last updated7911172106MITWhy this server?
Allows searching biomedical literature from PubMed/MEDLINE database with filters for authors, journals, publication types, and date ranges.
AlicenseBqualityCmaintenanceEnables searching and downloading academic papers from 14 platforms including arXiv, PubMed, Google Scholar, Web of Science, Springer, and Sci-Hub with unified data format and intelligent rate limiting.Last updated6419401177MITWhy this server?
Fetches PubMed records to cross-reference PDB structures with scientific literature.

io.github.rcsb/rcsb-mcpofficial
AlicenseAqualityBmaintenanceEnables discovery, inspection, and cross-referencing of Protein Data Bank structures through three RCSB APIs: search, data, and sequence coordinates.Last updated363MITWhy this server?
Provides tools to search PubMed, fetch abstracts, find related articles, and search by author, enabling literature retrieval and citation graph walking.
AlicenseAqualityDmaintenanceExposes NCBI PubMed as MCP tools for searching literature, fetching abstracts, exploring citation graphs, and finding author publications without requiring an API key.Last updated4MITWhy this server?
Enables searching academic papers on PubMed.
AlicenseAqualityBmaintenanceWeb search, content extraction, and library docs for AI agents with 5-strategy scraping and runs without API keys.Last updated6MIT